All modules for which code is available

• _abc
• src.analyzer
• src.configurator
• src.core.analyzer.adapter_trimmer
• src.core.analyzer.amplicon_coverage_computer
• src.core.analyzer.annotation_adapter
• src.core.analyzer.bam_grouper
• src.core.analyzer.bqsr_performer
• src.core.analyzer.i_data_preparator
• src.core.analyzer.i_variant_caller
• src.core.analyzer.primer_cutter
• src.core.analyzer.sequence_aligner
• src.core.analyzer.variant_caller
• src.core.analyzer.variant_caller_factory
• src.core.base
• src.core.configurator.argument_parser
• src.core.configurator.config_loader
• src.core.configurator.configuration_error
• src.core.configurator.logging_configurator
• src.core.configurator.path_validator
• src.core.sample_data_container
• src.core.sample_data_factory
• src.demultiplexor_adapter
• src.dependency_handler
• src.utils.demultiplexor_adapter.bcl2fastq_adapter
• src.utils.demultiplexor_adapter.demultiplexor_adapter_factory
• src.utils.demultiplexor_adapter.i_demultiplexor_adapter
• src.utils.reads_merger
• src.utils.report_aggregator.annotation_data_container
• src.utils.report_aggregator.i_report_data_container
• src.utils.report_aggregator.variant_data_container
• src.utils.table_manager.sample_sheet_builder
• src.utils.table_manager.sample_sheet_container
• src.utils.util