src

• src package
  • Subpackages
    • src.core package
      • Subpackages
      • Submodules
      • src.core.base module
      • src.core.sample_data_container module
      • src.core.sample_data_factory module
      • Module contents
    • src.utils package
      • Subpackages
      • Submodules
      • src.utils.reads_merger module
      • src.utils.report_merger module
      • src.utils.util module
      • Module contents
  • Submodules
  • src.analyzer module
    • Analyzer
      • Analyzer.configurator
      • Analyzer.cmd_caller
      • Analyzer.prepare_data()
      • Analyzer.analyze()
      • Analyzer.prepare_data()
      • Analyzer.analyze()
      • Analyzer._abc_impl
      • Analyzer._is_protocol
    • BRCAAnalyzer
      • BRCAAnalyzer.configurator
      • BRCAAnalyzer.cmd_caller
      • BRCAAnalyzer.prepare_data()
      • BRCAAnalyzer.analyze()
      • BRCAAnalyzer.prepare_data()
      • BRCAAnalyzer.analyze()
      • BRCAAnalyzer._abc_impl
      • BRCAAnalyzer._is_protocol
    • TestAnalyzerhg19
      • TestAnalyzerhg19._abc_impl
      • TestAnalyzerhg19._is_protocol
      • TestAnalyzerhg19.prepare_data()
      • TestAnalyzerhg19.analyze()
  • src.configurator module
    • Configurator
      • Configurator.args
      • Configurator.log_path
      • Configurator.logger
      • Configurator.output_dir
      • Configurator.config
      • Configurator._parse_args()
      • Configurator._setup_logger()
      • Configurator._setup_output_directory()
      • Configurator._load_configuration()
      • Configurator.parse_configuration()
      • Configurator._parse_args()
      • Configurator._setup_logger()
      • Configurator._setup_output_directory()
      • Configurator.parse_configuration()
  • src.demultiplexor_adapter module
    • main()
  • src.dependency_handler module
    • DependencyHandler
      • DependencyHandler.set_logger()
      • DependencyHandler.check_reference()
      • DependencyHandler.is_module_loaded()
      • DependencyHandler.try_to_install_module()
      • DependencyHandler.fetch_dependency()
      • DependencyHandler.verify_path()
      • DependencyHandler.resolve_file_path_by_extensions()
  • src.main module
  • src.table_manager module
  • Module contents